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 | Acesso ao texto completo restrito à biblioteca da Embrapa Arroz e Feijão. Para informações adicionais entre em contato com cnpaf.biblioteca@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Arroz e Feijão. |
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Data corrente: |
12/12/2011 |
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Data da última atualização: |
24/01/2013 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
SOUZA, T. L. P. O.; BARROS, E. G. de; BELLATO, C. M.; HWANG, E.-Y.; CREGAN, P. B.; PASTOR-CORRALES, M. A. |
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Afiliação: |
THIAGO LIVIO PESSOA OLIV DE SOUZA, CNPAF; EVERALDO G. DE BARROS, UNIVERSIDADE FEDERAL DE VIÇOSA; CLAUDIA M. BELLATO, USDA; EUN-YOUNG HWANG, USDA; PERRY B. CREGAN, USDA; MARCIAL A. PASTOR-CORRALES, USDA. |
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Título: |
Single nucleotide polymorphism discovery in common bean. |
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Ano de publicação: |
2012 |
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Fonte/Imprenta: |
Molecular Breeding, Dordrecht, v. 30, p. 419-428, 2012. |
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DOI: |
DOI 10.1007/s11032-011-9632-4 |
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Idioma: |
Inglês |
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Conteúdo: |
Single nucleotide polymorphisms (SNPs) were discovered in common bean (Phaseolus vulgaris L.) via resequencing of sequence-tagged sites (STSs) developed by PCR primers previously designed to soybean shotgun and bacterial artificial chromosome (BAC) end sequences, and by primers designed to common bean genes and microsatellite flanking regions. DNA fragments harboring SNPs were identified in single amplicons from six contrasting P. vulgaris genotypes of the Andean (Jalo EEP 558, G 19833, and AND 277) and Mesoamerican (BAT 93, DOR 364, and Ruda´) gene pools. These genotypes are the parents of three common bean recombinant inbred line mapping populations. From an initial set of 1,880 PCR primer pairs tested, 265 robust STSs were obtained, which could be sequenced in each one of the six common bean genotypes. In the resulting 131,120 bp of aligned sequence, a total of 677 SNPs were identified, including 555 single-base changes (295 transitions and 260 transversions) and 122 small nucleotide insertions/deletions (indels). The frequency of SNPs was 5.16 SNPs/kb and the mean nucleotide diversity, expressed as Halushka?s theta, was 0.00226. This work represents one of the first efforts aimed at detecting SNPs in P. vulgaris. The SNPs identified should be an important resource for common bean geneticists and breeders for quantitative trait locus discovery,marker-assisted selection, and map-based cloning. These SNPS will be also useful for diversity analysis and microsynteny studies among legume species. MenosSingle nucleotide polymorphisms (SNPs) were discovered in common bean (Phaseolus vulgaris L.) via resequencing of sequence-tagged sites (STSs) developed by PCR primers previously designed to soybean shotgun and bacterial artificial chromosome (BAC) end sequences, and by primers designed to common bean genes and microsatellite flanking regions. DNA fragments harboring SNPs were identified in single amplicons from six contrasting P. vulgaris genotypes of the Andean (Jalo EEP 558, G 19833, and AND 277) and Mesoamerican (BAT 93, DOR 364, and Ruda´) gene pools. These genotypes are the parents of three common bean recombinant inbred line mapping populations. From an initial set of 1,880 PCR primer pairs tested, 265 robust STSs were obtained, which could be sequenced in each one of the six common bean genotypes. In the resulting 131,120 bp of aligned sequence, a total of 677 SNPs were identified, including 555 single-base changes (295 transitions and 260 transversions) and 122 small nucleotide insertions/deletions (indels). The frequency of SNPs was 5.16 SNPs/kb and the mean nucleotide diversity, expressed as Halushka?s theta, was 0.00226. This work represents one of the first efforts aimed at detecting SNPs in P. vulgaris. The SNPs identified should be an important resource for common bean geneticists and breeders for quantitative trait locus discovery,marker-assisted selection, and map-based cloning. These SNPS will be also useful for diversity analysis and microsynteny studies a... Mostrar Tudo |
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Thesagro: |
DNA; Feijão; Phaseolus vulgaris; Polimorfismo genético. |
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Thesaurus Nal: |
Genome; Polymerase chain reaction; Single nucleotide polymorphism. |
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Categoria do assunto: |
F Plantas e Produtos de Origem Vegetal |
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Marc: |
LEADER 02303naa a2200277 a 4500
001 1909254
005 2013-01-24
008 2012 bl uuuu u00u1 u #d
024 7 $aDOI 10.1007/s11032-011-9632-4$2DOI
100 1 $aSOUZA, T. L. P. O.
245 $aSingle nucleotide polymorphism discovery in common bean.
260 $c2012
520 $aSingle nucleotide polymorphisms (SNPs) were discovered in common bean (Phaseolus vulgaris L.) via resequencing of sequence-tagged sites (STSs) developed by PCR primers previously designed to soybean shotgun and bacterial artificial chromosome (BAC) end sequences, and by primers designed to common bean genes and microsatellite flanking regions. DNA fragments harboring SNPs were identified in single amplicons from six contrasting P. vulgaris genotypes of the Andean (Jalo EEP 558, G 19833, and AND 277) and Mesoamerican (BAT 93, DOR 364, and Ruda´) gene pools. These genotypes are the parents of three common bean recombinant inbred line mapping populations. From an initial set of 1,880 PCR primer pairs tested, 265 robust STSs were obtained, which could be sequenced in each one of the six common bean genotypes. In the resulting 131,120 bp of aligned sequence, a total of 677 SNPs were identified, including 555 single-base changes (295 transitions and 260 transversions) and 122 small nucleotide insertions/deletions (indels). The frequency of SNPs was 5.16 SNPs/kb and the mean nucleotide diversity, expressed as Halushka?s theta, was 0.00226. This work represents one of the first efforts aimed at detecting SNPs in P. vulgaris. The SNPs identified should be an important resource for common bean geneticists and breeders for quantitative trait locus discovery,marker-assisted selection, and map-based cloning. These SNPS will be also useful for diversity analysis and microsynteny studies among legume species.
650 $aGenome
650 $aPolymerase chain reaction
650 $aSingle nucleotide polymorphism
650 $aDNA
650 $aFeijão
650 $aPhaseolus vulgaris
650 $aPolimorfismo genético
700 1 $aBARROS, E. G. de
700 1 $aBELLATO, C. M.
700 1 $aHWANG, E.-Y.
700 1 $aCREGAN, P. B.
700 1 $aPASTOR-CORRALES, M. A.
773 $tMolecular Breeding, Dordrecht$gv. 30, p. 419-428, 2012.
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Registro original: |
Embrapa Arroz e Feijão (CNPAF) |
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Biblioteca |
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| Registros recuperados : 14 | |
| 4. |  | NUNES JUNIOR, J.; CAMPOS, H. D.; SARTORATO, A. DEL PELOSO, M. J.; PASTOR-CORRALES, M. A.; PEREIRA, P. A. A. Ferrugem asiática da soja em cultivares de feijoeiro comum. In: CONGRESSO NACIONAL DE PESQUISA DE FEIJÃO, 8., 2005, Goiânia. Anais... Santo Antônio de Goiás: Embrapa Arroz e Feijão, 2005. v. 1. p. 466-469. (Embrapa Arroz e Feijão. Documentos, 182).| Tipo: Artigo em Anais de Congresso / Nota Técnica | Circulação/Nível: -- - -- |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 5. | | CREGAN, P.; BUSO, G. S. C.; SOUZA, T.; Ik-YOUNG, C.; HYTEN, D. L.; SONG, Q.; PASTOR-CORRALES, M. A. Single nucleotide polymorphism (SNP) DNA marker DISCOVERY IN common bean. In: INTERNATIONAL PLANT & ANIMAL GENOMES CONFERENCE, 17., 2009, San Diego, CA. [Proceedings...]. [S. l.: s.n.], 2009. W301| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 6. | | PASTOR-CORRALES, M. A.; SARTORATO, A.; LIEBENBERG, M. M.; DEL PELOSO, M. J.; PEREIRA, P. A. A.; NUNES JUNIOR, J.; CAMPOS, H. D. Evaluation of common bean cultivars from the United States for their reaction to soybean rust under field conditions in Brazil and South Africa. Annual Report of the Bean Improvement Cooperative, v. 50, p. 123-124, Mar. 2007.| Tipo: Artigo em Periódico Indexado |
| Biblioteca(s): Embrapa Arroz e Feijão. |
|  |
| 7. | | SOUZA, T. L. P. O.; GONÇALVES-VIDIGAL, M. C.; RAATZ, B.; MUKANKUSI, C. M.; ABREU, A. F. B.; MELO, L. C.; PASTOR-CORRALES, M. A. Major loci controlling resistance to the angular leaf spot of common bean. Annual Report of the Bean Improvement Cooperative, Prosser, v. 59, p. xv-xviii, Apr. 2016.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 3 |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 8. | | PASTOR CORRALES, M. A.; PEREIRA, P. A. A.; LEWERS, K.; BRONDANI, R. V.; BUSO, G. C.; FERREIRA, M. A.; MARTINS, W. S. Identification of SSR markers linked to rust resistance in andean bean PI 260418. In: ANNIVERSARY OF THE BEAN IMPROVEMENT COOPERATIVE, 50.; BIENNIAL, 19., 2007, Madison, Wisconsin. Program and abstracts. [S. l.]: Bean Improvement Cooperative, 2007. p. 20.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 9. | | PASTOR-CORRALES, M. A.; PEREIRA, P. A. A.; LEWERS, K.; BRONDANI, R. V.; BUSO, G. C.; FERREIRA, M. A.; MARTINS, W. S. Identification of SSR markers linked to rust resistance in andean bean PI 260418. In: ANNIVERSARY OF THE BEAN IMPROVEMENT COOPERATIVE, 50.; BIENNIAL, 19., 2007, Madison, Wisconsin. Program and abstracts. [S. l.]: Bean Improvement Cooperative, 2007. p. 20. Poster presentations.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 10. | | PASTOR-CORRALES, M. A.; PEREIRA, P. A. A.; LEWERS, K.; BRONDANI, R. V.; BUSO, G. C.; FERREIRA, M. A.; MARTINS, W. S. Identification of SSR markers linked to rust resistance in andean common bean PI 260418. Annual Report of the Bean Improvement Cooperative, East Lansing, v. 51, p. 46-47, Mar. 2008.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: Nacional - B |
| Biblioteca(s): Embrapa Arroz e Feijão; Embrapa Recursos Genéticos e Biotecnologia. |
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| 11. | | NAY, M. M.; SOUZA, T. L. P. O.; RAATZ, B.; MUKANKUSI, C. M.; GONÇALVES-VIDIGAL, M. C.; ABREU, A. F. B.; MELO, L. C.; PASTOR-CORRALES, M. A. A review of angular leaf spot resistance in common bean. Crop Science, v. 59, n. 4, p. 1376-1391, July/Aug. 2019.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 12. | | SOUZA, T. L. P. O.; BARROS, E. G. de; BELLATO, C. M.; HWANG, E.-Y.; CREGAN, P. B.; PASTOR-CORRALES, M. A. Single nucleotide polymorphism discovery in common bean. Molecular Breeding, Dordrecht, v. 30, p. 419-428, 2012.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 13. | | SOUZA, T. L. P. O.; VIANELLO, R. P.; PASSOS, A. L.; VALDISSER, P. A. M. R.; BARROS, E. G.; FONSECA, C. E. L.; PASTOR-CORRALES, M. A.; SONG, Q.; GREGAN, P. B. Construção de um mapa genético para o feijão usando marcadores SNP e a população de RILs Rudá x AND 277. In: CONGRESSO NACIONAL DE PESQUISA DE FEIJÃO, 11., 2014, Londrina. Tecnologias para a sustentabilidade da cultura do feijão: anais. Londrina: IAPAR, 2014. CONAFE| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 14. | | SILVA, L. C.; VALDISSER, P. A. M. R.; CRUZ, C. D.; CARNEIRO, J. E. de S.; CARNEIRO, P. C. S.; FONSECA, C. E. L. da; GONÇALVES, B. F. de S.; BARROS, E. G.; PASTOR-CORRALES, M. A.; SONG, Q.; GREGAN, P. B.; VIANELLO, R. P.; SOUZA, T. L. P. O. de. Mapa genético para o feijoeiro-comum usando marcadores SNP e a população de RILs Rudá X AND 277. CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 8., 2015, Goiânia. O melhoramento de plantas, o futuro da agricultura e a soberania nacional: anais. Goiânia: UFG: SBMP, 2015.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| Registros recuperados : 14 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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